#NEXUS Begin DATA; Dimensions ntax=31 nchar=688; Format datatype=dna gap=- missing=?; Matrix Robinia_hispida_010688 TCATTGTCGATGCCCCTA-ACAAGCAACCGACCCGTGAATTCGT-TTAA---CTACTTAGGG-TTGGCTCGGGGTGCTGAGCACC-TCGACCTCCCTTGGG-TTAGGGGG-GAGGTCACGTC---GTG--CCCTCTCCTCTTAGCCGA---AACACAAA-CCCC-GGCGCGGAATGCGTCAAGGAATCATAAAATCGTTTCACGTGCTCTCGTCCACCT--GGGGGCTTTTGCTCGTACGGG-TGGCGTTGCAGC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCGTTAGGCTGAGGGCACGCCTGCCTGGGTGTCACACATCGTTGCCCC--TATGCCAATCGCCTCACTTT--GTA--GGTA-TTTGCTTGGGG-TGAATGTTGGCCTCCCGTGAGCTCTGTCTCACGGTTGGTTGAAAA-TCGAGTGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTGA-TGCTC-GAGACCAATCATGGG--TAACTCCACCAGAATTGGGCTCGGTGACCCACA--TGCGTCCCTTGGATGCTCC-CTAAGGAGACCTCAGGTCAGGCGG Poissonia_hypoleuca_231089 TCATTGTCAATG-CCCG--ACAAGCAATCGACCCGTGAACTTGT-TTAA---CTACTTGGGG-TTGGCTCGGGGTGCTTTGCTCC-TCGACCTCCCTTTGG-TTAGGGGG-GAGGTGCTGC----GTG--CCCTCTCCTCTTAGCCGT---AAAACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATTT-TTTTCACGTGGTGGCGTCCACCTG------------------CGTGGTGGCGTTGCAGC-ACGTTAAGTACAGTACAATGACTCTCGGCAACGGATATCTCGGTTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAGGCCATTAGGTCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--GATGCCAATCGCCTCACTTT--GTG--GGAA-TTTGGTCGGGG-TGAATGTTGGCCTCCCGTGAGCTATGTCTCGCGGTTGGTTGAAAA-TTGAGTGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGCGA-TGCTC-GAGACCAATCATGAG--TAACTCCACCAGAATTGCTCTCGGCAACCCACT--TGCATCC-TTGGATGCTCA-TCAAGGGGACCTCAGGTCAGGCGG Olneya_tesota_011288 TCATTGTCGACGCCCC---ACAAGCAACCGACCCGCGAATATGT-TTTA---CTACTTGGGG-TTGGCTCGGGGTGTTTAGCACC-TCGACCTCCCTTGGG-TTAGGGGG-GAGGTCACGTTAGCGTG-ACCCTCTCCCCTTGGCCAT---AACACAAA-CCCC-GGCGCGGAATGCGTCAAGGAATAATAATTC-ATTTCACGTGCCCGTGTCCGCCC--AGGGGTGAT-TCCCGTACGGG-TGGGGACGCGGC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTATTTGAACGCAAGTTGCGCCCGAAACCACTAGGTCGAGGGCACGTCTGCCTGGGTGTCACGCATTGTTGCTCC--GATGCCAATCGCCTCACTTT--GTG--GGCA-TTCGCTCGGGG-TGAATGTTGGCCTCCCGCGAGCCTCGTCTCACGGTTGGTTGAAAA-TTGAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGCGA-TGCTC-GAGACCAATCATGGG--TAACCTCACCGGAATCGCGCTCGGTAACCCACA--TGCATCC-TTGGATGCTCC-CTAAGGAGACCTCAGGTCAGGCGG Sphinctospermum_constrictum_5120 TCATTGTCAATGCCTC---AAAAGCAATCGACCCGTGGACCCGTCCCTTCGGTTAATCGGGG-CTGGCTCGGGGTGCTTAGCTCC-TCGACCACCCCTGTG-CTAGGGGGTGTGGGTCACCT--CGTGGCCCCCATCCTCTCAGCCTCG--AACAAAAAACCCC-GGCGCGGAAAGCGTCAAGGAATCGAAATTC-TTTACACGTGCTCGCGTCTACCCG--GGGGCGTT-GCCCGCACGGG-TGGCGTTGCAGC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGCCTGCCTGGGTGTCACACGCTGTTGCCCC--GAAGCCAATCGCCTCACCGCGCGTG--GGCA-TTTGCCAGGGG-TGAATGTTGGCCTCCCGTGAGCCTCGTCTCGCGGTTGGTTGAAAC-TCGAGTGCATGGTGTTGGGTG-GCCATGATGGATGGTGG-CTGAGCGA-TGCTC-GAGACCAATCATGTG--CGACCCCTCCGTGATCGCGCTCGGAGACCCACA--TGCATCC-CAGGATGCTCC-TAGATGAGACCTCAGGTCAGGCGG Genistidium_dumosum_210890 TCATTGTCG------CTA-AATCGGAATCGACTCGCGAACTTGTTTTTACTACTATATGGGG-CAGGCTCGGGGCGCTTCGGCACCTCGACCTCCCTTGGG-CAAGGGGG-GTGGTCATGC----GTG-CCCTCCT-CTCTTAGCCTT---AACAAAAA-CCCC-GGCGCGGAACGCGTCAAGGAATCATAATTA--TTTCACGTGCTCGCGTC-----------------GCCCGTATGGG-TGGCGTCGCAGCAACGTTACCTAAAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGCCTGCCTGGGTGTCACACACTGTTGCCCC--GACGCCAATCGCATCACT-TAGGTG--GGCA-TTTGCGCGGGG-CGAATGTTGGCCTCCCGCGAGCTCCGTCTCACGGTTGGTTGAAAA-CTGAGCGCGTGGTGTCGGGCGTACCATGATGGATGGAGG-CTGAGCGAATGCTCGAAGACCAATCATGGG--TAACCCCACCGGAATCGGGCTCGGAGACCCACACACGCATCC-TTGGATGGTCG-TGAATGAGACCTCAGGTCAGGCGG Peteria_scoparia_Lott TCATTGTCGATGTCCCTA-AAAAGCAACCGACTCGCGAACATGTTTTTA---CTACTTGGGG-TTGGCTTGGGGTGCTTTGCACC-TCGACCTCCCTTGGG-CAAGGGGG-GAGGTCATGTC---GTG--CCCTCTCCTCTTAGCCTT---AACACAAA-CCCCCGGCGCGGAACGCGTCAAGGAATCATAATTA--TTTCACGTGCTCAAGTCGACTT--GGGGGCA-TAGCCCGTACGGG-TGGTGTTGAAGC-ACGTAATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGTTGAGGGCACGCCTGCTTGGGTGTCACACATCGTTGCTCC--AACGCCAATCGCCTCACCATGTGTG--GGCA-TTTGCTTGGGG-TGAATGTTGGCCTCCCGTGAGCTTGGTCTCACGGTTGGTTGAAAA-TTGAGCACATGGTGTATGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGAAGACCAATCATGGG--TCACCCCACCAGGATCTTGCTCAGCAACCCACA--TGCATCC-CTGGATGCTCG-TTAATGAGACCTCAGGTCAGGCGG Coursetia_elliptica_11558 TCATTGTCGATGACCCG-AAAAAAAAACAGACCCGTGGACATGTTTTTA---CTACTCGGGG-TTGGCTCGGGGTGCTTAGCACC-TTGACCTCCCTTTGG-CAA-GGGGTGAGGCCACATT---GTG--CCCTCTCCTCTAAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATTA-TTTCCACGTGCTCGCGTTGACCCG-GGGGGCGTA-GCCTGCACGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGCTGAGGGCACGTCTGCCTGGGTGTCACACATTGTTTCCCC--AATGCCAATCGCCTCACTTT--GTG--GGTA-TTTGCTAGGGG-TGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCGAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTTAATGCTCGGAGACCAATCATGGG--TAACCTCACTAGAATTGTGCTTGACAACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_polyphylla_8224 TCATTGTCGATGACCCG-AAAAACCAACAGACCCGTGGACATGTTTTTA---CAACTCGGGG-TTGGCTCGGGGTGCTTAGCACC-TTGACCTCCCTTTGG-CAA-GGGGTGCGGCCACATT---GTG--CCCTCTCCTCTAAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATTA-TTTCCACGTGCTCGCGTTGACCCG-GGGGGCGTA-GCCTGCACGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATCAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTTCCCC--AATGCCAATCGCCTCACTTT--GTG--GGTA-TTTGCTAGGGG-TGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCGAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTTAATGCTCGGAGACCAATCATGGG--TAACCTCACTAGAATTGTGCTTGACAACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_madrensis_4626 ACATTGTCGATGACC-G-AAAAAATAATAGACCCGTGGACATGTTTTTA---CTACTCGGGG-TTGGCTCGGGGTGCTTAGCACC-TTGGCCTCCCTTTGG-CAA-GGGGTGAGGCCACATT---GTG--CCCTCTCCTCTAAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATTA-TTTCCACGTGCTCACGTTGACCCGGGGGGCCGTA-GCCTGCATGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTTCCCC--AATGCCAATTGCCTCACTTT--GTG--GGTA-TTTGCTAGGGG-TGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCAAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGGG--TAACCTCACTAGAATTGTGCTCGACAACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_planipetiolata_5355 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGTGGACATGTTTTTA---CTACTCGGGG-TTGGCTCGGGGTGCTTAGCACC-TTGGCCTCCCTTTGG-CAA-GGGGTGAGGCCACATT---GTG--CCCTCTCCTCTAAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCTTAATTA-TTTCCACGTGCTCGCGTTGACCCG-GGGGGCGTA-GCCTGCATGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACACTGTTTGCCC--AATGCCAATTGCCTCACTTT--GTG--GGTA-TTTGCTAGGGG-TGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCAAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGGG--TAACCTCACTAGAATTGTGCTCGACAACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_paniculata_5320 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGTGGACATGTTTTTA---CTACTCGGGG-TTGGCTCGGGGTGCTTAGCACC-TTGGCCTCCCTTTGG-CAA-GGGGTGAGGCCACATT---GTG--CCCTCTCCTCTAAGCCTT---AACATAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATTA-TTTCCACGTGCTCGCGTTGACCCG-GGGGGCGTA-GCCTGCATGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTTCCCC--AATGCCAATTGCCTCACTTT--GTG--GGTA-TTTGCTAGGGG-TGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCAAGCGCATGGTGTCCGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGGG--TAACCTCACTAGAATTGTGCTCGACAACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_ferruginea_613 TCATTGTCGATGACCCG-AAAAAACAACAGACCCGCGGACTTGTATTTC---CTACTTGGGG-TTGGCTCGGGGTGCTCAGCACC-TCGACCAACCTAGGG-CAAAGGGGCGAGGCCACATC---GTG--CCCTCTCCTCTTAGCCTTCATAACACAAA-CCCC-GGCGCGAAAAGCGTCAAGGAATCATGATCA-TTTTCACGTGCTCGCGTCGACCCG-AGGGGCGTA-GCCCACGAGGG-TGGCGTCGTGAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCGCACATTGTTGCCCC--AACGCCAATCGCCTCACTTTT-GTG--GGCG-TTTTGCAGGGGGTGAATGTTGGCCTCCCGTGAGCTCTGTCTCGCGGTTGGTTGAAATATCGAGTGCACGGTGTCGGGCGTACCGTGATGCATGGTGGTTTGAGTGAATGCTCGGAGACCAATCACGCG--TAACCCCACCAGCGTTGTGCTCGGGGACCCACG--TGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_brachyrhachis_Lewis TCATTGTCGATGACCCG-AAAAAACAACAGACCCGCGGACGTGTTTTTA---CTACTTGGGG-CTGGCTCGGGGTGCTAAGCACC-TGGACCTCCCTTTGG-CAAGGGGGCGAGGGCACATT---GTG--CCCTCTCCTCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTTTCACGTGCTCGCGTCGACCTG--GGGGCGTA-GCCCGCACGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATCGCCTCACTTGT-GTG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGCTGTGCCTCGCGGTTGGTTGAAAAATCGAGTGCATGGTGTCGGGCATACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGCG--TAACCTCACCAGAGTCGTGCTCGGTGACCCACA--TGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_fruticosa_921 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGCGGACGTGTTTTTA---CTACTTGGGG-CTGGCTCGGGGTGCTCAACACC-TCGACCTCCCTTGGG-CAAAGGGGCGAGGCCACATC---GTG--CCCTCTCCTCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTTTCACGTGCTCGCGTCGACCTG-GGGGGCCTA-GGCCGCACGGG-TGGCGTCGTAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATCGCCTCACTTTT-GTG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGCTGTGCCTCGCGGTTGGTTGAAAAATCGAGCACATGGTGTCGGGCGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGCG--TAACCTCACCAGAGTCGTGCTCGGCGACCCACA--TGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_glandulosa_4671 TCATTGTCGATGACCCG-AAAAAACAACAGACCCGCGGACTTGTTTCTA---CTACTCGGGG-CTGGCTCGGGGTGCTCAGCGCC-TCGACCTCCCTTGGG-CAACGGGGCGAGGCCACATC---GTG--CCCTCTCCTCTCAGCCTC---AACACAAAACCCC-GGCGCGAAAAGCGTCAAGGAACCGTAATCA-TTTTCACGTGCTCGCGTCGACCCG-GGGGGCGCA-GCCCGCACGGG-CGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCGCACATTGTTGCCCCCCAACGCCAATCGCCTCACTTTT-GTG--GGCG-TTTGCTCGGGGGTGAATGTTGGCCTCCCGTGAGCTCTGCCTCGCGGTTGGTTGAAAA-TCGAGCGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGCG--TAACCTCACCAGAGTCGCGCTCGGCGACCCACG--TGCATCC-TCGGATGCCCT-CCATGGAGACCTCAGGTCAGGCGG Coursetia_axillaris_271287 TCATTGTCGATGACCCG-AAAAAGCAACAGACCCGCGAACATGTTTTCA---CTACTCGGGG-TTGGCTCGGGGTGCCTGGCACC-TCGACCTCCCTTGGG-CAA-GGGGCGAGGCCACGTC---GTG--TCCTCTCCTCTTAGCCTTT--AACACAAA-CCCC-GGCGCGAAAAGCGTCAAGGAATCATAATTA--TCTCACGTGCTCGCGTCGACTCG-GGGGGCGTA-GCCCGTACGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACACTGTTGCCCC--AACGCCAATCGCCTCACTCT--GTG-GGGCA-TTTGCCAGGGG-CGAATGTTGGCCTCCCGTGAGCTCCGCCTCGCGGTTGGTTGAAAAATCGAGCGCGCGGTGTCGGGCGTACCATGATGGACGGTGG-TTGAGTGAATGCTCGAAGACCAATCATGGG--CGACCTCACCAGAATCGGGCTCGGCAACCCATG--TGCATCC-TCGGATGCCCTCTCATGGAGACCTCAGGTCAGGCGG Coursetia_insomniifolia_5732a TCATTGTCGATGACCCA-AAAAAGCAACAGACCCGCGGACATGTTTTTA---CTACTTGGGG-TTGGCTCGGGGTGCCTGGCACC-TCGACCTCCCTTGGG-CAA-GGGGCGAGGCCACGTC---GTG--TCCTCTCCTCTTAGCCTTT--AACACAAA-CCCC-GGCGCGAAAAGCGTCAAGGAATCATAATTA--TCTCACGTGGTCGCGTCGACTCG-GGGGGCGTA-GCCCGTACGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACACTGTTGCCCC--AATGCCAATCGCCTCACTTT--GCGGGGGCA-TTTGGCAGGGG-TGAATGTTGGCCTCCCGTGAGCTCCGTCTCGCGGTTGGTTCAAAAATCGAGCGCGTGGTGTCGGTTGTACCATGATGGATGGTGG-TTGAGTGAACGCTCGAAGACCAATCATGCG--CAACCTCACCAGAATCGGGCTCGGGAACCCACG--TGCATCC-TCGGATGCTCTCTCATGGAGACCTCAGGTCAGGCGG Coursetia_pumila_5006 TCATTGTCGATGACCC--AAAAAACAACAGACCCGCGGACATGTTTATA---CTACTCGGGG-TTGGCTCGGGGCGCCCGACGCC-GCGACCTCCCCTGGG-CAAGGGGGCGAGGCCACATC---GTG--CCCTCTCCCCTCAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAACCATAATCA-TTTTCACGTGCTCGCGTCGACCCG--GGGGCGGA-GCCCGCACGGG-CGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACCTCAACCGCCTCGCTTTTTGCG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGCTTCGCCTCGCGGTTGGTTGAAAACTCGAGCGCATGGTGTCGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGAGGCCAATCATGCG--TAGCCTCACCATAGTCGAGCTCGGCGACCCGCG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_glabella_4960 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGCGGACATGTTTCTA---CTACTCGGGG--TGGCTCGGGGCGCCCGGCGCC-GTGACCTCCCCTGGG-CAAGGGGGCGAGGCCACATC---GTG--CCCTCTCCCCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAACCATAATCA-TTTTCACGTGCTCGCGTCGACCCG--GGGGCGGA-GCCCGCACGGG-CGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACCTCAACCGCCTCGCTTTTTGCG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGCTCTGTCTCGCGGTTGGTTGAAAACTCGAGCGCATGGTGTCGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGAGGCCAATCATGCG--TAGCCTCACCATAGTCGTGCTCGGCGACCCGCG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_caribaea_4603 TCATTGTCGATGACCCG-AAACAACAATAGACCCGCGGACATGTTTCTA---TTACTCGGGG-TTGGCTCGGGGTGCCCAGCGCC-TCGACCTCCCCTGGG-CAAGGGGGCGAGGCCACATT---GTG--CCCTCTCCCCTCAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAACCATAATCA-TTTTCACGTGCTCGCGTCGACTCG--GGGGCGGA-GCCCGCACGGG-CGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAACCGCCTCGCTTTTTGCG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGCTCCGTCTCGCGGTTGGTTGAAAACTCGAGCGCATGGTGTCGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGAGGCCAATCATGCG--TAGCCTCACCATAGTCGTGCTCGGCGACCCACG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_andina_5732 TCATTGTCGATGACCCG-AAAAAACAACAGACCCGCGGACATGTTTCTA---CTACTCGGGG-TTGGCTCGGGGCGCCCAGCGCC-TCGACCTCCCCTGGG-CAAGGGGGCGAGGCCACATC---GTG--CCCTCTCCCCTCAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAACCATAATCA-TTTTCACGTGCTCGCGTTGACCCG--GGGGCGGA-GCCCGCACGGG-CGGCGTCGCAAC-ACGTTATGTATAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTACCCC--AACGCCAACGGCCCCGCTTTTTGTG--GGCG-TTTGCTAGGGGGTGAATGTTGGCCTCCCGTGGGCTACGTCTCGCGGTTGGTTGAAAACTCGAGTGCATGGTGTTGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGAGGCCAATCATGCG--TAGCCTCACCATAGTCGTGCTCGGCGACCCACG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_vicioides_938 TCATTGTCGATGACCCG-AAAAAGCAACAGACCCGCGGACCAGTTTTTA---CTACTCGGGGGCTGGCTCGGGGTGCTCAGCACC-TCGACCTCCCTTGGG-CAA-GGGGCGAGGCCACACT---GTG--CCCCCTCCTCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTCTCACGTGCTCGCGTCGACCCG-GGGGGCGTA-GCCCGAACGGG-TGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACACTGTTGCCCC--AACGCCAATCGCCTCACTTTT-GTG--GGTG-CTTGCCAGGGGGCGAACGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAAATCGAGCGCGCGGTGTCGGGCGCACCATGATGGATGGTGGTT-GAGTGAATGCTCGGGGACCAATCATGGGTGTAACCTCACCAGAGTCGTGCTCGGCGACCCACG--GGCATCC-TCGGATGCTCT-TCACGGAGACCTCAGGTCAGGCGG Coursetia_hassleri_5809 TCATTGTCGATGACCC--AAAAAACAACAGACCCGCGGACATGTTTCTA---CTACTCGGGG-TTGGCTCGGGGCGCCTAGCGCC-TCGACCTCCCCTGGG-CAG-GGGGCGAGGCCACATC---GGG--CCCTCTCCTCTCAGCCTG---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCACAATCA-TTTTCGCGTGCTCGCGTCGACCCG--GGGGCGGA-GCCCGCACGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATCGCCTTGCTTTT-GCG--GGCG-TTTGCCAAGGGGTGAATGTTGGCCTCCCGTGAGCTCCGTCTCGCGGTTGGTTGAAAACTCGAGCGCATGGTGTCGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGAGACCAATCATGCG--TAGCCTCACCATAGTCGCGCTCGGCGACCCACG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_dubia_926 TCATTGTCGATGACCCGAAAAAATAAATAGACCAGCGGACATGTTTCTA---CTACTTGGGG-TTGGCTCGGGGTGCTCAGCGCC-TCAACCTCCCCTTGGGCAAGGGGGCGAGGCCACATT---GTG--CCCTCTCCTCTCAGCCTT---AACAAAAA-CCCC-GGCGCGAAAAGCGTCAAGGAATCATAATCG-TTTTCACGTGCTCGCGTCGACCCTGGGGGGCACA-GCCCACACGGGGTGGCGTTGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATTGCCTCACTTTT-GTG--GGCA-TTTGTTAGGGGGTGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAACTGGAGTGCATGGTGTCGGGTGTACCATGATGGATGGTGG-TCGAGTGAATGCTCGAAGGCCAATCATGTG--TAACCTCACCAGAGTAGTGCTCGGTGACCCACA--TGCATTC-TCGGATGCTTT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_grandiflora_929 TCATTGTCGATGACCCGAAAAAATAAATAGACCAGCGGACGTGTTTCTA------CTTGGGG-TTGGCTCGGGGTGCTCAGCGCC-TCAACCTCCCCTTGGGCAAGGGGGCGAGGCCACATT---GTG--CCCTCTCCTCTCAGCCTT---AACAAAAA-CCCC-GGCGCGAAAAGCGTCAAGGAATCATAATCG-TTTTCACGTGCTCGCGTCGACCCTGGGGGGCACA-GCCCACACGGGGTGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATTGCCTCACTTTT-GTG--GGCG-TTTGTTAGGGGGTGAATGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAACTCGAGTGCATGGTGTCGAGTGTACCATGATGGATGGTGG-TCGAGTGAATGCTCGAAGGCCAATCATGTG--TAACCTCACCAGAGTAGTGCTCGGTGACCCACA--TGCATTC-TCGGATGCTTT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_gracilis_629 TCATTGTCGATGACCCGAGAAAATAA-CAGACCCGCGAACATGTTTCCA---CTACTCGGGG-TTGGCTCGGGGTGCTCAGCGCC-TCGACCTCCCTTTGG-CAAGTGGGCGAGGCCACATC---GTG--CCCTCTCCTCTTAGCCTT---AACAAAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTTTCACGTGCTCGCGTCGACCC-GGGGGGCACA-GCCCACACGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATTGCCTCACTTTT-GTG--GGCG-TTTGTCAGGGG-TGAACGTTGGCCTCCCGTGAGCTTTGTCTCGCGGTTGGTTGAAAACTCGAGCGCATGGTGTCCGGTGTGCCGTGATGGATGGTGG-TCGAGTTAACGCTCGAAGGCCAATCATGTG--TAACCTCACCAGAGTCGTGCTCGGCGACCCACA--TGCATTC-TCGAATGCTCT-CCATGGAGACCTCAGGTCAGGCGG Coursetia_hintonii_1030 TCATTGTCGATGACTCG-AAAAAACAACAGACCCGCGGACGTGTTTTGA---CTACTTGGGG-TTGGCTCGGGGCGCTCAGCACC-TCGACCTCCCTTGGG-CAA-GGGGCGAGGCCACATC---GTG--CCCCCTCCCCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAACCATAATCA-TTTTCACGTGCTCGTGTCGACCCGTGGGGGCATA-GCCTGCACGGG-TGGCATAGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAGCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTCGCCCC--AACGCCAATCGCCTCACTTTT-GTG--GGAACTTTGCTAGGGGGTGAATGTTGGCCTCCCGTGAGCTCCGCCTCGCGGTTGGTTGAAAAATCGAGCGCATGGTGTTGGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGGCCAATCATGGG--TAGCCACACCGGTGTTGTGCTCGACGACCCACA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_mollis_1031 TCATTGTCGATGACCCGAAAAAAACAAGAGACCCGCGGACATGTTTCTA---CCACTGGGGG-TTGGCTCGGGGCGCTCAGCTCC-TGGGCCTCCCCCGGG-CAAGGGGGCGAGGCCACACA---GTG--CCCTCTCCTCTTAGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCACNATCA-TTTTCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTTTCGGCANCGGATATCTCGGCTCTTGCATCGATGAAGAGCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCTC--AA-GCCAACCGCCTTGCCTTT-GCG--GGCG-TTTGCCAGGGGGCGAATGTTGGCCTCCCGTGAGCTTCGTCTCGCGGTTGGTTGAAAACTCGAGTGCATGGCGTCGGGCGTACCATGATGGATGGTGGTTTGAGTGAATGCTCGGGGACCAATCATGCG--TAGCCTCGCCATAGTCGTGCTCGGCGACCCACG--CGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_maraniona_948 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGTGGACGTTTTTTTA---CTACTTGGGG-CTGGCTCGGGGTGCTTAGGACC-TCGACCTCCCTTGGG-CAAGGGGGTGAGGCCACATC---GTG--CCCTCTCCTCTTAGCCTT---AACATAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTTTCACGTGCTGGCGTCAACCTA-GGGGGCCTA-GCCCGCATGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATTGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATCGCCTCACATTT-GTG--GGCG-TTTTCCAGGGG-TGAATGTTGGCCTCCCGTGAGCTGTGCCTTGCGGTTGGTTGAAAAATCGAGCGCATGGTGTC-GGTGTAGGATGATGGATGGTGG-TTGAGTGAATGCTCTGAGACCAATCATGTG--TAACCCTACCAGAGTCGTGCTCGTTGACCCATA--TGCATCC-TTGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_cajamarcana_1675 TCATTGTCGATGACCCG-AAAAAACAATAGACCCGTGGACGTGTTTTTA---CTACTTGGGG-CTGGCTCGGGGTGCTCAGCACC-TCGACCTCCCTTGGG-CAAGGGGGCGAGGCCACATT---GTG--CCCTCTCTTCTTAGCCTT---AACATAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTTTCACGTGCTCGCGTCGACCTG-GGGGGCCTA-GCCCGCATGGG-TGGCGTCGCAAC-ACGTTATGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACATTGTTGCCCC--AACGCCAATCGCCTCACTTTT-GTG--GGCG-TTTGCCAGGGGGTGAATGTTGGCCTCCCGTGAGTTGTGCCTTGCGGTTGGTTGAAAAATCGAGTGCATGGTGTCGGGCGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGCG--TAACCTCACCAAAGTCGTGCTCGGCGACCCACA--TGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG Coursetia_rostrata_930 TCATTGTCGATGACCCG-AAAAAGCGACAGACCCGCGAACTAGTTTTTA---CTACTCGGGG-CTGGCTCGGGGTGCTCAGCACC-TCGACCTCCCTTGGG-CAA-GGGGCGAGGCCACATT---GTG--CCCCCTCCTCTTGGCCTT---AACACAAA-CCCC-GGCGCGGAAAGCGTCAAGGAATCATAATCA-TTCTCACGTGCTCGCGTCGACCCG-GGGGGCGTA-GCCCGAACGGG-TGGCGTTGCAAC-ACGTTACGTACAA-----TGACTCTCGGCAACGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGTGTCACACACTGTTGCCCC--AACGCCAATCGCCTCACTTTC-GTG--GGTG-TTTGCCAGGGGGCGAATGATGGCCTCCCGTGAGCTTTGTCTCGTGGTTGGTTGAAAAATCGAGCGCGTGGTGT-GGGTGTACCATGATGGATGGTGG-TTGAGTGAATGCTCGGAGACCAATCATGCGTGTAACCTGACCAGAGTCGTGCTCGACGACCCACG--TGCATCC-TCGGATGCTCT-TCATGGAGACCTCAGGTCAGGCGG ; end; [Run the MrBayes block with the MrBayes program first to get the output. Then bracket the MrBayes block, unbracket the paup block, and run the data set in PAUP. This will append 100 trees to the tree file, which will be in the "altnex" format that r8s can use.] begin mrbayes; set autoclose=yes; lset nst=6 rates=invgamma; [This will evaluate the GTR+I+G model that was selected from the ModelTest analysis.] mcmc ngen=1000000 [should be ngen=5000000] printfreq=100 samplefreq=5000 [should be samplefreq=25000] nchains=4 savebrlens=yes; [log start filename=cour1_MB_sump.nex replace;] [These summary analyses, sump and sumt, can be run in batch or entered as commands after the mcmc run has finished.] [sump;] [sump burnin=50 printtofile=yes;] [sumt burnin=50;] [log stop;] end; [ begin paup; set taxlabels=full maxtrees=10000 increase=no criterion=likelihood storebrlens=yes autoclose=yes; gettrees file=cour1_MB.nex.t storebrlens=yes; savetrees file=cour1_MB.nex.t from=102 to=201 format=altnexus root=yes brlens=yes maxdecimals=6 append=yes; end; ] [ begin mrbayes; set autoclose=yes; charset ITS1 = 1-264; charset 58S = 265-433; charset ITS2 = 434-695; partition ITS = 3: ITS1, 58S, ITS2; set partition=ITS; prset ratepr=variable; lset applyto=(1,2,3) nst=6 rates=invgamma; unlink shape=(all) pinvar=(all) statefreq=(all) revmat=(all); mcmc ngen=10000 printfreq=100 samplefreq=100 nchains=4 savebrlens=yes; end; ] [For AA data, use Prottest - http://darwin.uvigo.es/software/prottest.html - to select a model, e.g., WAG + I + G + F, to run this in MrBayes: ] [prset aamodel=fixed(wag)[to specify WAG matrix]] [prset statefreqpr=empirical[for F]] [lset rates=invgamma [for I and G]]